Uses of Class
bio.singa.simulation.model.graphs.AutomatonNode

Packages that use AutomatonNode

Package	Description
bio.singa.simulation.events
bio.singa.simulation.model.agents.filaments
bio.singa.simulation.model.agents.membranes
bio.singa.simulation.model.graphs
bio.singa.simulation.model.modules.displacement
bio.singa.simulation.model.rules
bio.singa.simulation.renderer

Uses of AutomatonNode in bio.singa.simulation.events

Methods in bio.singa.simulation.events with parameters of type AutomatonNode

Modifier and Type	Method and Description
void	EpochUpdateWriter.addNodeToObserve(AutomatonNode node) Initializes a node that will be observed during simulation.

Uses of AutomatonNode in bio.singa.simulation.model.agents.filaments

Methods in bio.singa.simulation.model.agents.filaments that return types with arguments of type AutomatonNode

Modifier and Type	Method and Description
Set<AutomatonNode>	SkeletalFilament.getAssociatedNodes()

Uses of AutomatonNode in bio.singa.simulation.model.agents.membranes

Methods in bio.singa.simulation.model.agents.membranes that return AutomatonNode

Modifier and Type	Method and Description
AutomatonNode	MembraneSegment.getNode()

Methods in bio.singa.simulation.model.agents.membranes with parameters of type AutomatonNode

Modifier and Type	Method and Description
void	Membrane.addSegment(AutomatonNode node, LineSegment segment)

Constructors in bio.singa.simulation.model.agents.membranes with parameters of type AutomatonNode

Constructor and Description
MembraneSegment(AutomatonNode node, LineSegment segment)

Uses of AutomatonNode in bio.singa.simulation.model.graphs

Methods in bio.singa.simulation.model.graphs that return AutomatonNode

Modifier and Type	Method and Description
AutomatonNode	AutomatonNode.getCopy()

Methods in bio.singa.simulation.model.graphs that return types with arguments of type AutomatonNode

Modifier and Type	Method and Description
static Set<AutomatonNode>	AutomatonGraphs.circleRegion(AutomatonGraph graph, CellRegion membraneRegion, RectangularCoordinate centre, int radius)

Methods in bio.singa.simulation.model.graphs with parameters of type AutomatonNode

Modifier and Type	Method and Description
int	AutomatonGraph.addEdgeBetween(AutomatonNode source, AutomatonNode target)
int	AutomatonGraph.addEdgeBetween(int identifier, AutomatonNode source, AutomatonNode target)

Uses of AutomatonNode in bio.singa.simulation.model.modules.displacement

Methods in bio.singa.simulation.model.modules.displacement that return types with arguments of type AutomatonNode

Modifier and Type	Method and Description
Map<AutomatonNode,javax.measure.Quantity<javax.measure.quantity.Area>>	Vesicle.getAssociatedNodes()

Methods in bio.singa.simulation.model.modules.displacement with parameters of type AutomatonNode

Modifier and Type	Method and Description
void	Vesicle.addAssociatedNode(AutomatonNode node, javax.measure.Quantity<javax.measure.quantity.Area> associatedArea)

Uses of AutomatonNode in bio.singa.simulation.model.rules

Methods in bio.singa.simulation.model.rules with parameters of type AutomatonNode

Modifier and Type	Method and Description
void	AssignmentRule.applyRule(AutomatonNode node)

Uses of AutomatonNode in bio.singa.simulation.renderer

Methods in bio.singa.simulation.renderer with parameters of type AutomatonNode

Modifier and Type	Method and Description
protected void	AutomatonGraphRenderer.drawNode(AutomatonNode node)