bio.singa.simulation.model.parameters

Class UnitScaler

java.lang.Object

bio.singa.simulation.model.parameters.UnitScaler

public class UnitScaler
extends Object

Constructor Summary

Constructors

Constructor and Description
UnitScaler()

Method Summary

Modifier and Type	Method and Description
static javax.measure.Quantity<Diffusivity>	rescaleDiffusivity(javax.measure.Quantity<Diffusivity> unscaledQuantity, javax.measure.Quantity<javax.measure.quantity.Time> targetTimeScale, javax.measure.Quantity<javax.measure.quantity.Length> targetLengthScale) Scales the diffusivity for the use with cellular graph automata.
static javax.measure.Quantity<javax.measure.quantity.Frequency>	rescaleReactionRate(javax.measure.Quantity<javax.measure.quantity.Frequency> unscaledQuantity, javax.measure.Quantity<javax.measure.quantity.Time> targetScale) Scales the reaction rate for the use with cellular graph automata.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

UnitScaler

public UnitScaler()

Method Detail

rescaleReactionRate

public static javax.measure.Quantity<javax.measure.quantity.Frequency> rescaleReactionRate(javax.measure.Quantity<javax.measure.quantity.Frequency> unscaledQuantity,
                                                                                           javax.measure.Quantity<javax.measure.quantity.Time> targetScale)

Scales the reaction rate for the use with cellular graph automata. The unscaled quantity is transformed to the unit specified by target time and multiplied by the value of the time scale.

Parameters:

unscaledQuantity - The quantity that is to be scaled.

targetScale - The required time step.

Returns:

The scaled reaction rate.

rescaleDiffusivity

public static javax.measure.Quantity<Diffusivity> rescaleDiffusivity(javax.measure.Quantity<Diffusivity> unscaledQuantity,
                                                                     javax.measure.Quantity<javax.measure.quantity.Time> targetTimeScale,
                                                                     javax.measure.Quantity<javax.measure.quantity.Length> targetLengthScale)

Scales the diffusivity for the use with cellular graph automata. The unscaled quantity is transformed to the unit specified by target time and length scales. Further the unscaled quantity is divided by the squared length scale and multiplied by the time scale.

Parameters:

unscaledQuantity - The quantity that is to be scaled.

targetTimeScale - The required time step.

targetLengthScale - The required spatial step.

Returns:

The scaled diffusivity.