bio.singa.simulation.model.modules.displacement.implementations

Class EndocytosisActinBoost

java.lang.Object

bio.singa.simulation.model.modules.displacement.DisplacementBasedModule

bio.singa.simulation.model.modules.displacement.implementations.EndocytosisActinBoost

All Implemented Interfaces:

UpdateModule

public class EndocytosisActinBoost
extends DisplacementBasedModule

Author:

cl

Field Summary

Fields

Modifier and Type	Field and Description
static RateConstant	DEFAULT_CLATHRIN_DEPOLYMERIZATION_RATE Average vesicle with a radius of 50 nm was coated by 60 clathrins.

Fields inherited from class bio.singa.simulation.model.modules.displacement.DisplacementBasedModule

simulation, state, updateScheduler

Constructor Summary

Constructors

Constructor and Description
EndocytosisActinBoost()

Method Summary

Modifier and Type	Method and Description
DisplacementDelta	calculateDisplacement(Vesicle vesicle)
void	calculateUpdates()
void	setDecayingEntity(ChemicalEntity decayingEntity)
String	toString()

Methods inherited from class bio.singa.simulation.model.modules.displacement.DisplacementBasedModule

addDeltaFunction, checkFeatures, determineDeltas, evaluateModuleState, getFeature, getFeatures, getIdentifier, getReferencedEntities, getRequiredFeatures, getScaledFeature, getScaledFeature, getState, getStringForProtocol, listFeatures, optimizeTimeStep, processAllVesicles, resetState, scaleScalableFeatures, setFeature, setSimulation

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

DEFAULT_CLATHRIN_DEPOLYMERIZATION_RATE

public static final RateConstant DEFAULT_CLATHRIN_DEPOLYMERIZATION_RATE

Average vesicle with a radius of 50 nm was coated by 60 clathrins. The depolymerization finished after about 11 seconds. 9.963234242562985E-23 is the concentration of 60 clathrin molecules scaled to 1 mol/um^3

Constructor Detail

EndocytosisActinBoost

public EndocytosisActinBoost()

Method Detail

setDecayingEntity

public void setDecayingEntity(ChemicalEntity decayingEntity)

calculateUpdates

public void calculateUpdates()

Specified by:

calculateUpdates in interface UpdateModule

Overrides:

calculateUpdates in class DisplacementBasedModule

calculateDisplacement

public DisplacementDelta calculateDisplacement(Vesicle vesicle)

toString

public String toString()

Overrides:

toString in class Object