bio.singa.simulation.model.modules.displacement.implementations

Class ClathrinMediatedEndocytosis

java.lang.Object

bio.singa.simulation.model.modules.displacement.DisplacementBasedModule

bio.singa.simulation.model.modules.displacement.implementations.ClathrinMediatedEndocytosis

All Implemented Interfaces:

UpdateModule

public class ClathrinMediatedEndocytosis
extends DisplacementBasedModule

Author:

cl

Field Summary

Fields inherited from class bio.singa.simulation.model.modules.displacement.DisplacementBasedModule

simulation, state, updateScheduler

Constructor Summary

Constructors

Constructor and Description
ClathrinMediatedEndocytosis()

Method Summary

Modifier and Type	Method and Description
void	addMembraneCargo(javax.measure.Quantity<javax.measure.quantity.Area> referenceArea, double numberOfEntities, ChemicalEntity chemicalEntity)
void	addMembraneSegment(MembraneSegment segment)
void	calculateUpdates()
protected void	evaluateModuleState()
HashMap<Vesicle,javax.measure.Quantity<javax.measure.quantity.Time>>	getMaturingVesicles()
void	optimizeTimeStep()
String	toString()

Methods inherited from class bio.singa.simulation.model.modules.displacement.DisplacementBasedModule

addDeltaFunction, checkFeatures, determineDeltas, getFeature, getFeatures, getIdentifier, getReferencedEntities, getRequiredFeatures, getScaledFeature, getScaledFeature, getState, getStringForProtocol, listFeatures, processAllVesicles, resetState, scaleScalableFeatures, setFeature, setSimulation

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ClathrinMediatedEndocytosis

public ClathrinMediatedEndocytosis()

Method Detail

calculateUpdates

public void calculateUpdates()

Specified by:

calculateUpdates in interface UpdateModule

Overrides:

calculateUpdates in class DisplacementBasedModule

addMembraneCargo

public void addMembraneCargo(javax.measure.Quantity<javax.measure.quantity.Area> referenceArea,
                             double numberOfEntities,
                             ChemicalEntity chemicalEntity)

evaluateModuleState

protected void evaluateModuleState()

Overrides:

evaluateModuleState in class DisplacementBasedModule

optimizeTimeStep

public void optimizeTimeStep()

Specified by:

optimizeTimeStep in interface UpdateModule

Overrides:

optimizeTimeStep in class DisplacementBasedModule

addMembraneSegment

public void addMembraneSegment(MembraneSegment segment)

getMaturingVesicles

public HashMap<Vesicle,javax.measure.Quantity<javax.measure.quantity.Time>> getMaturingVesicles()

toString

public String toString()

Overrides:

toString in class Object