bio.singa.simulation.model.modules.concentration.imlementations

Class Diffusion

java.lang.Object

bio.singa.simulation.model.modules.concentration.ConcentrationBasedModule<EntityDeltaFunction>

bio.singa.simulation.model.modules.concentration.imlementations.Diffusion

All Implemented Interfaces:

UpdateModule

public class Diffusion
extends ConcentrationBasedModule<EntityDeltaFunction>

Author:

cl

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static interface	Diffusion.BuildStep
static class	Diffusion.DiffusionBuilder
static interface	Diffusion.SelectionStep

Field Summary

Fields inherited from class bio.singa.simulation.model.modules.concentration.ConcentrationBasedModule

supplier

Constructor Summary

Constructors

Constructor and Description
Diffusion()

Method Summary

Modifier and Type	Method and Description
void	initialize()
static Diffusion.SelectionStep	inSimulation(Simulation simulation)

Methods inherited from class bio.singa.simulation.model.modules.concentration.ConcentrationBasedModule

addDeltaFunction, addModuleToSimulation, addReferencedEntities, addReferencedEntity, calculateUpdates, checkFeatures, deltaIsValid, determineLargestLocalError, getApplicationCondition, getDeltaCutoff, getErrorCutoff, getFeature, getFeatures, getIdentifier, getReferencedEntities, getRequiredFeatures, getScaledFeature, getScaledFeature, getScope, getSimulation, getSpecificity, getState, getStringForProtocol, getSupplier, handleDelta, listFeatures, optimizeTimeStep, resetState, scaleScalableFeatures, setApplicationCondition, setDeltaCutoff, setErrorCutoff, setFeature, setIdentifier, setSimulation, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Diffusion

public Diffusion()

Method Detail

inSimulation

public static Diffusion.SelectionStep inSimulation(Simulation simulation)

initialize

public void initialize()