Uses of Interface
bio.singa.simulation.model.modules.UpdateModule

Packages that use UpdateModule

Package	Description
bio.singa.simulation.model.graphs
bio.singa.simulation.model.modules.concentration
bio.singa.simulation.model.modules.concentration.imlementations
bio.singa.simulation.model.modules.displacement
bio.singa.simulation.model.modules.displacement.implementations
bio.singa.simulation.model.simulation

Uses of UpdateModule in bio.singa.simulation.model.graphs

Methods in bio.singa.simulation.model.graphs with parameters of type UpdateModule

Modifier and Type	Method and Description
void	AutomatonNode.clearPotentialDeltasBut(UpdateModule module)

Uses of UpdateModule in bio.singa.simulation.model.modules.concentration

Classes in bio.singa.simulation.model.modules.concentration that implement UpdateModule

Modifier and Type	Class and Description
class	ConcentrationBasedModule<DeltaFunctionType extends AbstractDeltaFunction> Concentration based modules handle updates that are applied to the concentrations in Updatables during a simulation.

Methods in bio.singa.simulation.model.modules.concentration with parameters of type UpdateModule

Modifier and Type	Method and Description
void	ConcentrationDeltaManager.clearPotentialDeltasBut(UpdateModule module) Clears the list of potential deltas retaining updates from a specific module.

Uses of UpdateModule in bio.singa.simulation.model.modules.concentration.imlementations

Classes in bio.singa.simulation.model.modules.concentration.imlementations that implement UpdateModule

Modifier and Type	Class and Description
class	ComplexBuildingReaction Complex building or breaking reactions are a special kind of ReversibleReaction.
class	Diffusion
class	DynamicReaction
class	MembraneDiffusion A permeant is crossing a membrane from side 1 to side 2.
class	MichaelisMentenReaction
class	NthOrderReaction
class	Reaction
class	ReversibleReaction
class	SingleFileChannelMembraneTransport

Uses of UpdateModule in bio.singa.simulation.model.modules.displacement

Classes in bio.singa.simulation.model.modules.displacement that implement UpdateModule

Modifier and Type	Class and Description
class	DisplacementBasedModule

Methods in bio.singa.simulation.model.modules.displacement with parameters of type UpdateModule

Modifier and Type	Method and Description
void	Vesicle.clearPotentialDeltasBut(UpdateModule module)

Uses of UpdateModule in bio.singa.simulation.model.modules.displacement.implementations

Classes in bio.singa.simulation.model.modules.displacement.implementations that implement UpdateModule

Modifier and Type	Class and Description
class	ClathrinMediatedEndocytosis
class	EndocytosisActinBoost
class	VesicleAttachment
class	VesicleDiffusion
class	VesicleFusion
class	VesicleTransport

Uses of UpdateModule in bio.singa.simulation.model.simulation

Methods in bio.singa.simulation.model.simulation that return types with arguments of type UpdateModule

Modifier and Type	Method and Description
List<UpdateModule>	Simulation.getModules()

Methods in bio.singa.simulation.model.simulation with parameters of type UpdateModule

Modifier and Type	Method and Description
void	Updatable.clearPotentialDeltasBut(UpdateModule module)