4.0.0 bcbio.variation bcbio.variation jar 0.1.5 bcbio.variation Toolkit to analyze genomic variation data, built on the GATK with Clojure MIT http://www.opensource.org/licenses/mit-license.html scm:git:git://github.com/chapmanb/bcbio.variation.git scm:git:ssh://git@github.com/chapmanb/bcbio.variation.git fc5bac476ec9d9efb79dfd07a07590e319d95ba2 https://github.com/chapmanb/bcbio.variation src test resources dev-resources resources target target/classes org.codehaus.mojo build-helper-maven-plugin 1.7 add-source generate-sources add-source src/java central http://repo1.maven.org/maven2/ false true clojars https://clojars.org/repo/ true true biojava http://www.biojava.org/download/maven/ false true org.clojure clojure 1.5.1 org.clojure math.combinatorics 0.0.3 org.clojure clojure org.clojure data.csv 0.1.2 org.clojure clojure org.clojure tools.cli 0.2.2 clj-stacktrace clj-stacktrace 0.2.5 bcbio.run bcbio.run 0.0.1-SNAPSHOT org.clojars.chapmanb gatk-framework 3.0 org.clojars.chapmanb picard 1.107 org.clojars.chapmanb sam 1.107 org.clojars.chapmanb tribble 1.107 org.clojars.chapmanb variant 1.107 colt colt 1.2.0 commons-lang commons-lang 2.5 log4j log4j 1.2.17 org.apache.commons commons-jexl 2.1.1 org.reflections reflections 0.9.8 org.simpleframework simple-xml 2.0.4 org.apache.servicemix.bundles org.apache.servicemix.bundles.jets3t 0.8.1_1 org.biojava biojava3-core 3.0.4 org.biojava biojava3-alignment 3.0.4 org.clojars.chapmanb circdesigna 0.0.2 net.sf.beaver beaver-ant nz.ac.waikato.cms.weka weka-stable 3.6.6 org.clojars.chapmanb fast-random-forest 0.98 com.leadtune clj-ml 0.2.4 cs.waikato.ac.nz weka hr.irb fastRandomForest org.clojure clojure incanter incanter-core incanter incanter-charts clj-yaml clj-yaml 0.4.0 doric doric 0.8.0 org.clojure clojure iota iota 1.1.1 ordered ordered 1.3.2 org.clojure clojure de.kotka lazymap 3.1.1 lonocloud synthread 1.0.4 pallet-fsm pallet-fsm 0.1.0 criterium criterium 0.4.1 org.clojure clojure clj-time clj-time 0.5.1 org.clojure java.jdbc 0.2.2 org.xerial sqlite-jdbc 3.7.2 c3p0 c3p0 0.9.1.2 hiccup hiccup 1.0.1 enlive enlive 1.0.1 org.clojure clojure org.clojure tools.nrepl 0.2.3 org.clojure clojure test clojure-complete clojure-complete 0.2.3 org.clojure clojure test midje midje 1.5.1 org.clojure clojure ordered ordered test incanter incanter-core 1.5.1 org.clojure clojure junit junit test incanter incanter-charts 1.5.1 org.clojure clojure junit junit test incanter incanter-excel 1.5.1 org.clojure clojure junit junit test org.clojars.chapmanb snpeff 3.1 com.googlecode.charts4j charts4j junit junit test clj-genomespace clj-genomespace 0.1.3 test clj-blend clj-blend 0.1.1-SNAPSHOT test clj-aws-s3 clj-aws-s3 0.3.1 org.codehaus.jackson jackson-mapper-asl org.codehaus.jackson jackson-core-asl test